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How DNAnexus and Edico Genome radically improve healthcare services using Amazon’s FPGA-based AWS EC2 F1 instance

Xilinx Employee
Xilinx Employee
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Late last month, I wrote about an announcement by DNAnexus and Edico Genome that described a huge reduction in the cost and time to analyze genomic information, enabled by Amazon’s FPGA-accelerated AWS EC2 F1 instance. (See “Edico Genome and DNAnexus announce $20, 90-minute genome analysis on Amazon’s FPGA-accelerated AWS EC2 F1 instance.”) The AWS Partner Network blog has just published more details in an article written by Amazon’s Aaron Friedman, titled “How DNAnexus and Edico Genome are Powering Precision Medicine on Amazon Web Services (AWS).



The details are exciting to say the least. The article begins with this statement:


“Diagnosing the medical mysteries behind acutely ill babies can be a race against time, filled with a barrage of tests and misdiagnoses. During the first few days of life, a few hours can save or seal the fate of patients admitted to the neonatal intensive care units (NICUs) and pediatric intensive care units (PICUs). Accelerating the analysis of the medical assays conducted in these hospitals can improve patient outcomes, and, in some cases, save lives.”



Then, if you read far enough into the post, you find this statement:


Rady Children’s Institute for Genomic Medicine is one of the global leaders in advancing precision medicine. To date, the institute has sequenced the genomes of more than 3,000 children and their family members to diagnose genetic diseases. 40% of these patients are diagnosed with a genetic disease, and 80% of these receive a change in medical management. This is a remarkable rate of change in care, considering that these are rare diseases and often involve genomic variants that have not been previously observed in other individuals.”



This example is merely a road sign, pointing the way to even more exciting developments in FPGA-accelerated, cloud-based computing to come. Well-known Silicon Valley venture capitalist Jim Hogan directly addressed these developments in a speech at San Jose State University just a couple of weeks ago. (See “Four free training videos (two hour's worth) on using Xilinx SDAccel to create apps for Amazon AWS EC2 F1 instances.”)



The Amazon AWS EC2 F1 instance is a cloud service that’s based on multiple Xilinx Virtex UltraScale+ VU9P FPGAs installed in Amazon’s Web servers. For more information on the AWS EC2 F1 Instance in Xcell Daily, see: